PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002535-PA
Common NameOsI_00096
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 71aa    MW: 7836.07 Da    PI: 6.5151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002535-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.0002914313855
                      STCHHHHHHHHHHHHHHH CS
               HLH 38 lsKaeiLekAveYIksLq 55
                      ++ +++LekA++Y+k Lq
  BGIOSGA002535-PA 14 VDLVTMLEKAINYVKFLQ 31
                      666899***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-51342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-41738IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MATMEHSKAP SINVDLVTML EKAINYVKFL QLQVKVLATD EFWPAQGGKA PELSQVKDAL  60
DAILSSQHPN K
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329937962e-96
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085874e-94AK108587.1 Oryza sativa Japonica Group cDNA clone:002-146-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643664.12e-34PREDICTED: transcription factor bHLH81-like
RefseqXP_015643698.13e-34PREDICTED: transcription factor bHLH83
SwissprotQ9C7071e-28BH083_ARATH; Transcription factor bHLH83
TrEMBLB8ACV73e-46B8ACV7_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA002535-PA8e-46(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.17e-30ROOT HAIR DEFECTIVE6